PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G29280.1
Common NameLOC102711330
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 314aa    MW: 34401.3 Da    PI: 4.9948
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G29280.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.10.000182633021054
                   HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
           HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                   +rRR+ri +  + Lr+++P      +k  +  ++L +A+ Y+k+L
  OB03G29280.1 263 KRRRERIQETVAALRKIVPGG---IAK--DATAVLDEAICYLKYL 302
                   9******************97...333..3458999999999999 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.89253302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-6263310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.5E-7263309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.48E-4263307No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MGEKVNPWCY WPNPPWTESS ANNLHPSDVS HENTNSMAFP TYLNSDGYIY PGVAASMPSF  60
AASVAERPAS LSSRFVTTLA PSVGMSTADN LRKRPLVFFH NENNPFTVVP LLRKGVLDAV  120
PELQGSNETN VTDVGAQNTG CMHENTEEID AFLCSDSDEG FLKVQELNKI WKYPMQNDTM  180
SVESVASAGT SQPAKKRRLS SGADRSVVDT ASSARPDHSV DQKHLSHDDD AHSCCIGEVE  240
SEHQFSLREG EEAEGDDSPD DRKRRRERIQ ETVAALRKIV PGGIAKDATA VLDEAICYLK  300
YLKLKVKTLG AVSL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1261265RKRRR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0993230.0AC099323.6 Oryza sativa chromosome 3 BAC OSJNBa0065F09 genomic sequence, complete sequence.
GenBankAK0656740.0AK065674.1 Oryza sativa Japonica Group cDNA clone:J013036B10, full insert sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006650159.10.0PREDICTED: transcription factor bHLH144-like
RefseqXP_015690943.10.0PREDICTED: transcription factor bHLH144-like
TrEMBLJ3LPF20.0J3LPF2_ORYBR; Uncharacterized protein
STRINGOB03G29280.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100311820